Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM3Q53GG5 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PDLIM3Q53GG5 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 AC009947.2-201ENST00000444014 672 ntBASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 LINC01238-205ENST00000567549 1107 ntBASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 AC120498.8-201ENST00000614275 531 ntBASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PDLIM3Q53GG5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 AL354751.1-201ENST00000412768 1863 ntBASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 TREX2-204ENST00000370212 861 ntTSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 AF186192.3-201ENST00000583427 947 ntBASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
PDLIM3Q53GG5 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PDLIM3Q53GG5 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms