Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 Z85996.1-201ENST00000494644 937 ntBASIC14.14□□□□□ -0.15
HIST1H1AQ02539 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 AL445675.2-201ENST00000620291 557 ntBASIC14.14□□□□□ -0.15
HIST1H1AQ02539 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 HTR7P1-201ENST00000538670 1336 ntBASIC14.14□□□□□ -0.15
HIST1H1AQ02539 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
HIST1H1AQ02539 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.13□□□□□ -0.15
HIST1H1AQ02539 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 NIFKP9-201ENST00000419265 221 ntBASIC14.13□□□□□ -0.15
HIST1H1AQ02539 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 IRX5-204ENST00000560154 879 ntTSL 5 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
HIST1H1AQ02539 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 AC124067.4-201ENST00000519691 2379 ntBASIC14.12□□□□□ -0.15
HIST1H1AQ02539 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
HIST1H1AQ02539 POU5F1P3-201ENST00000428824 1078 ntBASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms