Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CL1P78423 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
CX3CL1P78423 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CL1P78423 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CX3CL1P78423 CYP2D8P-201ENST00000433633 1490 ntBASIC14.88□□□□□ -0.03
CX3CL1P78423 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CL1P78423 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.88□□□□□ -0.03
CX3CL1P78423 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 GPAT2P1-201ENST00000444924 1672 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 AL109659.2-201ENST00000606809 1674 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 TSPY14P-201ENST00000303979 915 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 AL023284.2-201ENST00000405850 579 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC14.87□□□□□ -0.03
CX3CL1P78423 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC14.87□□□□□ -0.03
CX3CL1P78423 EGLN1P1-201ENST00000531623 762 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.87□□□□□ -0.03
CX3CL1P78423 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
CX3CL1P78423 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.87□□□□□ -0.03
CX3CL1P78423 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 NOC2LP1-202ENST00000452600 2235 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 AC092338.2-201ENST00000568827 1415 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC14.86□□□□□ -0.03
CX3CL1P78423 MCCD1P1-208ENST00000445732 328 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 AP003041.3-201ENST00000527151 707 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC14.86□□□□□ -0.03
CX3CL1P78423 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 AC010947.1-201ENST00000623454 693 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC14.86□□□□□ -0.03
CX3CL1P78423 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 SNAI3-AS1-205ENST00000568633 2096 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 MTMR9LP-203ENST00000426597 1545 ntBASIC14.86□□□□□ -0.03
CX3CL1P78423 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC14.86□□□□□ -0.03
CX3CL1P78423 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
CX3CL1P78423 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 AC008556.1-201ENST00000610908 2040 ntBASIC14.85□□□□□ -0.03
CX3CL1P78423 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
CX3CL1P78423 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.85□□□□□ -0.03
CX3CL1P78423 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
CX3CL1P78423 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.85□□□□□ -0.03
CX3CL1P78423 AC007663.1-201ENST00000438948 1240 ntBASIC14.85□□□□□ -0.03
CX3CL1P78423 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC14.85□□□□□ -0.03
CX3CL1P78423 AC128688.1-201ENST00000487626 519 ntBASIC14.85□□□□□ -0.03
CX3CL1P78423 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms