Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA3P55318 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 KRT17P1-201ENST00000399211 1546 ntBASIC13.86□□□□□ -0.19
FOXA3P55318 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
FOXA3P55318 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA3P55318 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA3P55318 KRT18P16-201ENST00000510337 1294 ntBASIC13.86□□□□□ -0.19
FOXA3P55318 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC13.86□□□□□ -0.19
FOXA3P55318 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 AL499627.1-201ENST00000569373 2188 ntBASIC13.86□□□□□ -0.19
FOXA3P55318 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
FOXA3P55318 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC13.86□□□□□ -0.19
FOXA3P55318 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
FOXA3P55318 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
FOXA3P55318 MTMR9LP-203ENST00000426597 1545 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 AL512625.2-201ENST00000417533 625 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA3P55318 AC005829.2-201ENST00000571422 1056 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA3P55318 OR10C1-204ENST00000622521 1039 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 AC018695.7-201ENST00000624587 2492 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA3P55318 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
FOXA3P55318 AC108860.2-201ENST00000562760 2183 ntBASIC13.85□□□□□ -0.19
FOXA3P55318 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA3P55318 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA3P55318 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
FOXA3P55318 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA3P55318 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms