Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.88■□□□□ 0.45
FOXA1P55317 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
FOXA1P55317 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 RPS2P55-201ENST00000397318 883 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 AC107956.1-201ENST00000494359 873 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 AC097488.1-201ENST00000507834 756 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC17.88■□□□□ 0.45
FOXA1P55317 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 REXO1L10P-201ENST00000615707 1290 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 REXO1L12P-201ENST00000622156 912 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
FOXA1P55317 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
FOXA1P55317 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.88■□□□□ 0.45
FOXA1P55317 AL096828.2-201ENST00000567259 1965 ntBASIC17.88■□□□□ 0.45
FOXA1P55317 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.88■□□□□ 0.45
FOXA1P55317 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
FOXA1P55317 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA1P55317 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.87■□□□□ 0.45
FOXA1P55317 AC034236.2-201ENST00000606662 1610 ntBASIC17.87■□□□□ 0.45
FOXA1P55317 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
FOXA1P55317 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.87■□□□□ 0.45
FOXA1P55317 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
FOXA1P55317 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
FOXA1P55317 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
FOXA1P55317 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA1P55317 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.87■□□□□ 0.45
FOXA1P55317 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
FOXA1P55317 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
FOXA1P55317 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
FOXA1P55317 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
FOXA1P55317 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 ABHD17AP1-201ENST00000358206 933 ntBASIC17.86■□□□□ 0.45
FOXA1P55317 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 AP000593.1-201ENST00000393668 712 ntBASIC17.86■□□□□ 0.45
FOXA1P55317 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 GCSHP5-201ENST00000443090 522 ntBASIC17.86■□□□□ 0.45
FOXA1P55317 AL158047.1-201ENST00000445918 881 ntBASIC17.86■□□□□ 0.45
FOXA1P55317 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
FOXA1P55317 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 PHGDH-209ENST00000641074 1780 ntBASIC17.86■□□□□ 0.45
FOXA1P55317 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.86■□□□□ 0.45
FOXA1P55317 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
FOXA1P55317 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.86■□□□□ 0.45
FOXA1P55317 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
FOXA1P55317 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
FOXA1P55317 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
FOXA1P55317 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
FOXA1P55317 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms