Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.33■□□□□ 0.68
APOEP02649 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC19.33■□□□□ 0.68
APOEP02649 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 WIZP1-201ENST00000531444 2299 ntBASIC19.33■□□□□ 0.68
APOEP02649 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 HOXB1-202ENST00000577092 1414 ntBASIC19.33■□□□□ 0.68
APOEP02649 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
APOEP02649 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
APOEP02649 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
APOEP02649 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.32■□□□□ 0.68
APOEP02649 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.32■□□□□ 0.68
APOEP02649 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.32■□□□□ 0.68
APOEP02649 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.32■□□□□ 0.68
APOEP02649 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
APOEP02649 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
APOEP02649 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 MIR1224-201ENST00000408193 85 ntBASIC19.32■□□□□ 0.68
APOEP02649 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.32■□□□□ 0.68
APOEP02649 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
APOEP02649 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.32■□□□□ 0.68
APOEP02649 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
APOEP02649 AC024243.1-201ENST00000609234 778 ntBASIC19.32■□□□□ 0.68
APOEP02649 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC19.32■□□□□ 0.68
APOEP02649 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC19.32■□□□□ 0.68
APOEP02649 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
APOEP02649 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
APOEP02649 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.31■□□□□ 0.68
APOEP02649 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 HOMER2P1-201ENST00000455653 964 ntBASIC19.31■□□□□ 0.68
APOEP02649 AC063952.2-201ENST00000498792 1227 ntBASIC19.31■□□□□ 0.68
APOEP02649 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.31■□□□□ 0.68
APOEP02649 AC022616.7-201ENST00000525383 220 ntBASIC19.31■□□□□ 0.68
APOEP02649 GCSHP2-201ENST00000560971 527 ntBASIC19.31■□□□□ 0.68
APOEP02649 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.31■□□□□ 0.68
APOEP02649 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 AL590326.2-201ENST00000625139 305 ntBASIC19.31■□□□□ 0.68
APOEP02649 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
APOEP02649 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
APOEP02649 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.31■□□□□ 0.68
APOEP02649 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC19.31■□□□□ 0.68
APOEP02649 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
APOEP02649 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
APOEP02649 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
APOEP02649 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.3■□□□□ 0.68
APOEP02649 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.3■□□□□ 0.68
APOEP02649 AC010331.1-201ENST00000611423 582 ntBASIC19.3■□□□□ 0.68
APOEP02649 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.3■□□□□ 0.68
APOEP02649 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms