Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 FITM1-202ENST00000559294 800 ntBASIC18.11■□□□□ 0.49
VPS4BO75351 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VPS4BO75351 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VPS4BO75351 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
VPS4BO75351 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS4BO75351 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS4BO75351 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS4BO75351 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS4BO75351 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 CYP2D8P-201ENST00000433633 1490 ntBASIC18.1■□□□□ 0.49
VPS4BO75351 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 AC073508.3-201ENST00000619697 1419 ntBASIC18.1■□□□□ 0.49
VPS4BO75351 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS4BO75351 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 AL390955.1-201ENST00000428694 934 ntBASIC18.1■□□□□ 0.49
VPS4BO75351 AC104076.2-201ENST00000448912 469 ntBASIC18.1■□□□□ 0.49
VPS4BO75351 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS4BO75351 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS4BO75351 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.1■□□□□ 0.49
VPS4BO75351 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VPS4BO75351 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS4BO75351 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS4BO75351 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS4BO75351 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS4BO75351 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS4BO75351 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.09■□□□□ 0.49
VPS4BO75351 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.09■□□□□ 0.49
VPS4BO75351 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.09■□□□□ 0.49
VPS4BO75351 AC010947.1-201ENST00000623454 693 ntBASIC18.09■□□□□ 0.49
VPS4BO75351 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.09■□□□□ 0.49
VPS4BO75351 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS4BO75351 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
VPS4BO75351 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.09■□□□□ 0.49
VPS4BO75351 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
VPS4BO75351 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VPS4BO75351 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS4BO75351 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS4BO75351 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
VPS4BO75351 AC005332.8-201ENST00000622750 2735 ntBASIC18.08■□□□□ 0.49
VPS4BO75351 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
VPS4BO75351 KRT8P11-201ENST00000409686 1436 ntBASIC18.08■□□□□ 0.49
VPS4BO75351 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.08■□□□□ 0.49
VPS4BO75351 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VPS4BO75351 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.08■□□□□ 0.49
VPS4BO75351 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
VPS4BO75351 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms