Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 AC008040.2-201ENST00000461049 708 ntBASIC16.24■□□□□ 0.19
LMX1BO60663 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC16.24■□□□□ 0.19
LMX1BO60663 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.24■□□□□ 0.19
LMX1BO60663 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LMX1BO60663 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC16.24■□□□□ 0.19
LMX1BO60663 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.24■□□□□ 0.19
LMX1BO60663 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
LMX1BO60663 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1BO60663 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LMX1BO60663 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1BO60663 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LMX1BO60663 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LMX1BO60663 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.23■□□□□ 0.19
LMX1BO60663 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
LMX1BO60663 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
LMX1BO60663 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1BO60663 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.23■□□□□ 0.19
LMX1BO60663 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.23■□□□□ 0.19
LMX1BO60663 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1BO60663 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
LMX1BO60663 AC128688.1-201ENST00000487626 519 ntBASIC16.23■□□□□ 0.19
LMX1BO60663 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.23■□□□□ 0.19
LMX1BO60663 AC010203.1-204ENST00000548782 407 ntBASIC16.23■□□□□ 0.19
LMX1BO60663 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.23■□□□□ 0.19
LMX1BO60663 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.23■□□□□ 0.19
LMX1BO60663 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC16.23■□□□□ 0.19
LMX1BO60663 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.23■□□□□ 0.19
LMX1BO60663 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LMX1BO60663 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
LMX1BO60663 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1BO60663 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.22■□□□□ 0.19
LMX1BO60663 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.22■□□□□ 0.19
LMX1BO60663 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 EGLN1P1-201ENST00000531623 762 ntBASIC16.22■□□□□ 0.19
LMX1BO60663 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.22■□□□□ 0.19
LMX1BO60663 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1BO60663 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.22■□□□□ 0.19
LMX1BO60663 AC026271.3-201ENST00000571884 352 ntBASIC16.22■□□□□ 0.19
LMX1BO60663 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.22■□□□□ 0.19
LMX1BO60663 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 AC135776.1-201ENST00000319817 2481 ntBASIC16.22■□□□□ 0.19
LMX1BO60663 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
LMX1BO60663 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.22■□□□□ 0.19
LMX1BO60663 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.21■□□□□ 0.19
LMX1BO60663 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
LMX1BO60663 KRT8P3-201ENST00000519669 1449 ntBASIC16.21■□□□□ 0.19
LMX1BO60663 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.21■□□□□ 0.19
LMX1BO60663 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LMX1BO60663 PRSS44-201ENST00000515154 1146 ntBASIC16.21■□□□□ 0.19
LMX1BO60663 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.21■□□□□ 0.19
LMX1BO60663 AP005242.2-201ENST00000580065 1175 ntBASIC16.21■□□□□ 0.19
LMX1BO60663 DGCR10-201ENST00000609839 495 ntBASIC16.21■□□□□ 0.19
LMX1BO60663 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.21■□□□□ 0.19
LMX1BO60663 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms