Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SGCEO43556 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
SGCEO43556 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
SGCEO43556 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.31■□□□□ 0.2
SGCEO43556 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 AC104581.1-202ENST00000635932 2618 ntBASIC16.31■□□□□ 0.2
SGCEO43556 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.31■□□□□ 0.2
SGCEO43556 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.31■□□□□ 0.2
SGCEO43556 AL353719.1-201ENST00000566847 864 ntBASIC16.31■□□□□ 0.2
SGCEO43556 AL023803.3-201ENST00000615559 522 ntBASIC16.31■□□□□ 0.2
SGCEO43556 AC116562.4-202ENST00000641738 218 ntBASIC16.31■□□□□ 0.2
SGCEO43556 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 AL499627.1-201ENST00000569373 2188 ntBASIC16.31■□□□□ 0.2
SGCEO43556 AC126763.1-201ENST00000552015 2118 ntBASIC16.31■□□□□ 0.2
SGCEO43556 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.31■□□□□ 0.2
SGCEO43556 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.31■□□□□ 0.2
SGCEO43556 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SGCEO43556 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
SGCEO43556 AL139384.1-201ENST00000612143 3047 ntBASIC16.3■□□□□ 0.2
SGCEO43556 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.3■□□□□ 0.2
SGCEO43556 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 KRT8P45-201ENST00000414328 1447 ntBASIC16.3■□□□□ 0.2
SGCEO43556 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
SGCEO43556 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.3■□□□□ 0.2
SGCEO43556 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 AP003041.3-201ENST00000527151 707 ntBASIC16.3■□□□□ 0.2
SGCEO43556 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.3■□□□□ 0.2
SGCEO43556 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.3■□□□□ 0.2
SGCEO43556 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.3■□□□□ 0.2
SGCEO43556 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.3■□□□□ 0.2
SGCEO43556 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SGCEO43556 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 AC009113.1-201ENST00000570267 2443 ntBASIC16.29■□□□□ 0.2
SGCEO43556 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SGCEO43556 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SGCEO43556 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 MIR564-202ENST00000385049 94 ntBASIC16.29■□□□□ 0.2
SGCEO43556 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SGCEO43556 AL596275.1-201ENST00000423464 877 ntBASIC16.29■□□□□ 0.2
SGCEO43556 TSPY15P-201ENST00000457163 923 ntBASIC16.29■□□□□ 0.2
SGCEO43556 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.29■□□□□ 0.2
SGCEO43556 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms