Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
MSH4O15457 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
MSH4O15457 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 LINC01126-201ENST00000623515 1646 ntBASIC20.67■□□□□ 0.9
MSH4O15457 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.67■□□□□ 0.9
MSH4O15457 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.67■□□□□ 0.9
MSH4O15457 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH4O15457 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH4O15457 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.67■□□□□ 0.9
MSH4O15457 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
MSH4O15457 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC20.67■□□□□ 0.9
MSH4O15457 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH4O15457 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH4O15457 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH4O15457 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.66■□□□□ 0.9
MSH4O15457 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.66■□□□□ 0.9
MSH4O15457 KRT18P48-201ENST00000434763 852 ntBASIC20.66■□□□□ 0.9
MSH4O15457 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH4O15457 AC011498.5-201ENST00000592027 486 ntBASIC20.66■□□□□ 0.9
MSH4O15457 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.66■□□□□ 0.9
MSH4O15457 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
MSH4O15457 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
MSH4O15457 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
MSH4O15457 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 AP003733.1-201ENST00000491725 852 ntBASIC20.65■□□□□ 0.9
MSH4O15457 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.65■□□□□ 0.9
MSH4O15457 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.65■□□□□ 0.9
MSH4O15457 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.65■□□□□ 0.9
MSH4O15457 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.65■□□□□ 0.9
MSH4O15457 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC20.65■□□□□ 0.9
MSH4O15457 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
MSH4O15457 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.65■□□□□ 0.9
MSH4O15457 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.64■□□□□ 0.9
MSH4O15457 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
MSH4O15457 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
MSH4O15457 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 KRT89P-201ENST00000620027 1478 ntBASIC20.64■□□□□ 0.89
MSH4O15457 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
MSH4O15457 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
MSH4O15457 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.64■□□□□ 0.89
MSH4O15457 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms