Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 NIFKP9-201ENST00000419265 221 ntBASIC15.72■□□□□ 0.11
SDCBPO00560 AL353807.1-201ENST00000427475 662 ntBASIC15.72■□□□□ 0.11
SDCBPO00560 TSPY20P-201ENST00000450910 630 ntBASIC15.72■□□□□ 0.11
SDCBPO00560 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.72■□□□□ 0.11
SDCBPO00560 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
SDCBPO00560 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 AL445675.2-201ENST00000620291 557 ntBASIC15.72■□□□□ 0.11
SDCBPO00560 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.72■□□□□ 0.11
SDCBPO00560 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.72■□□□□ 0.11
SDCBPO00560 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.72■□□□□ 0.11
SDCBPO00560 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.72■□□□□ 0.11
SDCBPO00560 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
SDCBPO00560 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 NFYC-AS1-201ENST00000606277 1687 ntBASIC15.71■□□□□ 0.11
SDCBPO00560 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC15.71■□□□□ 0.11
SDCBPO00560 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC15.71■□□□□ 0.11
SDCBPO00560 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC15.71■□□□□ 0.11
SDCBPO00560 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.71■□□□□ 0.11
SDCBPO00560 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.71■□□□□ 0.11
SDCBPO00560 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.71■□□□□ 0.11
SDCBPO00560 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SDCBPO00560 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC15.71■□□□□ 0.11
SDCBPO00560 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC15.71■□□□□ 0.11
SDCBPO00560 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SDCBPO00560 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SDCBPO00560 AC134043.2-201ENST00000624206 2238 ntBASIC15.71■□□□□ 0.1
SDCBPO00560 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
SDCBPO00560 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC15.71■□□□□ 0.1
SDCBPO00560 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.1
SDCBPO00560 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.7■□□□□ 0.1
SDCBPO00560 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
SDCBPO00560 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
SDCBPO00560 MTMR9LP-203ENST00000426597 1545 ntBASIC15.7■□□□□ 0.1
SDCBPO00560 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.7■□□□□ 0.1
SDCBPO00560 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.7■□□□□ 0.1
SDCBPO00560 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.7■□□□□ 0.1
SDCBPO00560 ITM2C-210ENST00000620962 501 ntBASIC15.7■□□□□ 0.1
SDCBPO00560 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.7■□□□□ 0.1
SDCBPO00560 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SDCBPO00560 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SDCBPO00560 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
SDCBPO00560 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.69■□□□□ 0.1
SDCBPO00560 KRT8P41-201ENST00000533985 1514 ntBASIC15.69■□□□□ 0.1
SDCBPO00560 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SDCBPO00560 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.69■□□□□ 0.1
SDCBPO00560 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.69■□□□□ 0.1
SDCBPO00560 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SDCBPO00560 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms