Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HMGN4O00479 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.18■□□□□ 0.34
HMGN4O00479 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
HMGN4O00479 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
HMGN4O00479 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 AL163051.1-201ENST00000569214 1512 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 AC138028.4-201ENST00000564984 1845 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGN4O00479 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.17■□□□□ 0.34
HMGN4O00479 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 SDHAP2-201ENST00000455183 2001 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 AC092338.2-201ENST00000568827 1415 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 HOXB1-202ENST00000577092 1414 ntBASIC17.17■□□□□ 0.34
HMGN4O00479 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HMGN4O00479 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HMGN4O00479 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
HMGN4O00479 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 CR769767.2-201ENST00000622735 460 ntBASIC17.16■□□□□ 0.34
HMGN4O00479 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.16■□□□□ 0.34
HMGN4O00479 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HMGN4O00479 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC17.16■□□□□ 0.34
HMGN4O00479 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HMGN4O00479 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.16■□□□□ 0.34
HMGN4O00479 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HMGN4O00479 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HMGN4O00479 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
HMGN4O00479 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGN4O00479 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC17.15■□□□□ 0.34
HMGN4O00479 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.15■□□□□ 0.34
HMGN4O00479 WWOX-216ENST00000569818 525 ntBASIC17.15■□□□□ 0.34
HMGN4O00479 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HMGN4O00479 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms