Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
UPK1AO00322 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
UPK1AO00322 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.52■□□□□ 0.4
UPK1AO00322 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.52■□□□□ 0.4
UPK1AO00322 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.52■□□□□ 0.4
UPK1AO00322 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.52■□□□□ 0.4
UPK1AO00322 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
UPK1AO00322 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
UPK1AO00322 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
UPK1AO00322 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
UPK1AO00322 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.52■□□□□ 0.39
UPK1AO00322 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
UPK1AO00322 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.52■□□□□ 0.39
UPK1AO00322 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
UPK1AO00322 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 AL357033.4-201ENST00000617703 1807 ntBASIC17.51■□□□□ 0.39
UPK1AO00322 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.51■□□□□ 0.39
UPK1AO00322 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.51■□□□□ 0.39
UPK1AO00322 FITM1-202ENST00000559294 800 ntBASIC17.51■□□□□ 0.39
UPK1AO00322 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
UPK1AO00322 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 AC020763.4-201ENST00000623414 4170 ntBASIC17.51■□□□□ 0.39
UPK1AO00322 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
UPK1AO00322 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.51■□□□□ 0.39
UPK1AO00322 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 AL390955.1-201ENST00000428694 934 ntBASIC17.5■□□□□ 0.39
UPK1AO00322 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 AL109659.2-201ENST00000606809 1674 ntBASIC17.5■□□□□ 0.39
UPK1AO00322 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.5■□□□□ 0.39
UPK1AO00322 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 AC008556.1-201ENST00000610908 2040 ntBASIC17.5■□□□□ 0.39
UPK1AO00322 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
UPK1AO00322 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
UPK1AO00322 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
UPK1AO00322 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.5■□□□□ 0.39
UPK1AO00322 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 GPAT2P1-201ENST00000444924 1672 ntBASIC17.49■□□□□ 0.39
UPK1AO00322 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
UPK1AO00322 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
UPK1AO00322 AL023284.2-201ENST00000405850 579 ntBASIC17.49■□□□□ 0.39
UPK1AO00322 TSPY15P-201ENST00000457163 923 ntBASIC17.49■□□□□ 0.39
UPK1AO00322 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.49■□□□□ 0.39
UPK1AO00322 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.49■□□□□ 0.39
UPK1AO00322 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.49■□□□□ 0.39
UPK1AO00322 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.49■□□□□ 0.39
UPK1AO00322 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.49■□□□□ 0.39
UPK1AO00322 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
UPK1AO00322 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
UPK1AO00322 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
UPK1AO00322 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
UPK1AO00322 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms