Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HEIH-201ENST00000623091 1652 ntBASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC139530.3-201ENST00000620344 690 ntBASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC083906.6-201ENST00000641366 219 ntBASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AL031133.1-201ENST00000406807 723 ntBASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 HIST1H2APS4-201ENST00000362070 348 ntBASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PRSS44-201ENST00000515154 1146 ntBASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 AC010947.1-201ENST00000623454 693 ntBASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
SENP3-EIF4A1A0A087X0R7 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 Z98044.1-201ENST00000632503 1764 ntBASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 AC063952.2-201ENST00000498792 1227 ntBASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 AC068587.9-201ENST00000641814 219 ntBASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC24.88■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
SENP3-EIF4A1A0A087X0R7 AC128688.1-201ENST00000487626 519 ntBASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms