Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 AC005332.3-201ENST00000589904 676 ntBASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CTDP1Q9Y5B0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 AP002383.4-201ENST00000442518 975 ntBASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 LINC00265-3P-201ENST00000447588 903 ntBASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 AC024563.2-201ENST00000603282 481 ntBASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 IGHV3-41-201ENST00000613121 348 ntBASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.34■■□□□ 1.01
CTDP1Q9Y5B0 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 AC020763.4-201ENST00000623414 4170 ntBASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 AP000867.3-201ENST00000524675 377 ntBASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 MIR3180-1-201ENST00000580374 94 ntBASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 MIR3180-3-201ENST00000584616 94 ntBASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTDP1Q9Y5B0 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.33■■□□□ 1
CTDP1Q9Y5B0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTDP1Q9Y5B0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CTDP1Q9Y5B0 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms