Protein–RNA interactions for Protein: Q9UBK2

PPARGC1A, Peroxisome proliferator-activated receptor gamma coactivator 1-alpha, humanhuman

Known RBP Predictions only

Length 798 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPARGC1AQ9UBK2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 KRT8P7-201ENST00000533003 1432 ntBASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.24■□□□□ 0.67
PPARGC1AQ9UBK2 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 AC034236.2-201ENST00000606662 1610 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 AP000523.1-201ENST00000398242 1049 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 BX664615.1-201ENST00000443558 458 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 AC009947.2-201ENST00000444014 672 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 KRT18P41-201ENST00000518924 1277 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 Z98044.1-201ENST00000632503 1764 ntBASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
PPARGC1AQ9UBK2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 HOXB1-202ENST00000577092 1414 ntBASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PPARGC1AQ9UBK2 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 AL031598.1-201ENST00000561511 1773 ntBASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PPARGC1AQ9UBK2 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms