Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX2Q9NPC8 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.83■□□□□ 0.77
SIX2Q9NPC8 AC104390.1-201ENST00000555663 520 ntBASIC19.83■□□□□ 0.77
SIX2Q9NPC8 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.83■□□□□ 0.77
SIX2Q9NPC8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SIX2Q9NPC8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.83■□□□□ 0.77
SIX2Q9NPC8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SIX2Q9NPC8 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 AC112497.1-201ENST00000624824 639 ntBASIC19.82■□□□□ 0.76
SIX2Q9NPC8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SIX2Q9NPC8 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 AC138028.4-201ENST00000564984 1845 ntBASIC19.81■□□□□ 0.76
SIX2Q9NPC8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 LINC01126-201ENST00000623515 1646 ntBASIC19.81■□□□□ 0.76
SIX2Q9NPC8 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 ECEL1P2-202ENST00000465689 757 ntBASIC19.81■□□□□ 0.76
SIX2Q9NPC8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 NAPSB-206ENST00000562112 1266 ntBASIC19.81■□□□□ 0.76
SIX2Q9NPC8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 AC066615.1-201ENST00000640911 628 ntBASIC19.81■□□□□ 0.76
SIX2Q9NPC8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SIX2Q9NPC8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SIX2Q9NPC8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms