Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
NKX3-1Q99801 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.14■□□□□ 0.18
NKX3-1Q99801 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.14■□□□□ 0.18
NKX3-1Q99801 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 KRT17P3-201ENST00000420566 1262 ntBASIC16.14■□□□□ 0.17
NKX3-1Q99801 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 AC142381.4-202ENST00000563973 229 ntBASIC16.14■□□□□ 0.17
NKX3-1Q99801 AC004264.1-201ENST00000608354 794 ntBASIC16.14■□□□□ 0.17
NKX3-1Q99801 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 AC068587.9-201ENST00000641814 219 ntBASIC16.14■□□□□ 0.17
NKX3-1Q99801 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
NKX3-1Q99801 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.14■□□□□ 0.17
NKX3-1Q99801 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
NKX3-1Q99801 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.13■□□□□ 0.17
NKX3-1Q99801 ESPNP-201ENST00000270691 2015 ntBASIC16.12■□□□□ 0.17
NKX3-1Q99801 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
NKX3-1Q99801 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
NKX3-1Q99801 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms