Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SKA1Q96BD8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
SKA1Q96BD8 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.62
SKA1Q96BD8 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.95■□□□□ 0.62
SKA1Q96BD8 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.95■□□□□ 0.62
SKA1Q96BD8 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.95■□□□□ 0.62
SKA1Q96BD8 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SKA1Q96BD8 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SKA1Q96BD8 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SKA1Q96BD8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AL671277.2-201ENST00000458060 996 ntBASIC18.93■□□□□ 0.62
SKA1Q96BD8 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
SKA1Q96BD8 AC008622.2-201ENST00000617006 1229 ntBASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms