Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
BRF1Q92994 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
BRF1Q92994 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 AC018470.1-201ENST00000624790 3129 ntBASIC21.74■■□□□ 1.07
BRF1Q92994 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.74■■□□□ 1.07
BRF1Q92994 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
BRF1Q92994 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
BRF1Q92994 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.74■■□□□ 1.07
BRF1Q92994 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.74■■□□□ 1.07
BRF1Q92994 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC21.74■■□□□ 1.07
BRF1Q92994 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.74■■□□□ 1.07
BRF1Q92994 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.74■■□□□ 1.07
BRF1Q92994 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC21.74■■□□□ 1.07
BRF1Q92994 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.74■■□□□ 1.07
BRF1Q92994 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
BRF1Q92994 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
BRF1Q92994 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
BRF1Q92994 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC21.73■■□□□ 1.07
BRF1Q92994 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 HMGA1P5-201ENST00000412453 271 ntBASIC21.73■■□□□ 1.07
BRF1Q92994 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.73■■□□□ 1.07
BRF1Q92994 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.73■■□□□ 1.07
BRF1Q92994 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BRF1Q92994 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.73■■□□□ 1.07
BRF1Q92994 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.72■■□□□ 1.07
BRF1Q92994 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.72■■□□□ 1.07
BRF1Q92994 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.72■■□□□ 1.07
BRF1Q92994 AL163051.1-201ENST00000569214 1512 ntBASIC21.72■■□□□ 1.07
BRF1Q92994 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
BRF1Q92994 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.72■■□□□ 1.07
BRF1Q92994 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
BRF1Q92994 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.72■■□□□ 1.07
BRF1Q92994 AC009947.2-201ENST00000444014 672 ntBASIC21.72■■□□□ 1.07
BRF1Q92994 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 AC145285.6-201ENST00000604632 637 ntBASIC21.72■■□□□ 1.07
BRF1Q92994 AC112497.1-201ENST00000624824 639 ntBASIC21.72■■□□□ 1.07
BRF1Q92994 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.72■■□□□ 1.07
BRF1Q92994 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 KRT18P22-201ENST00000402024 1347 ntBASIC21.72■■□□□ 1.07
BRF1Q92994 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
BRF1Q92994 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC21.72■■□□□ 1.07
BRF1Q92994 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.71■■□□□ 1.07
BRF1Q92994 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.71■■□□□ 1.07
BRF1Q92994 ABALON-201ENST00000629058 1903 ntBASIC21.71■■□□□ 1.07
BRF1Q92994 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.71■■□□□ 1.07
BRF1Q92994 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BRF1Q92994 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
BRF1Q92994 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.71■■□□□ 1.07
BRF1Q92994 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.71■■□□□ 1.07
BRF1Q92994 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.71■■□□□ 1.07
BRF1Q92994 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
BRF1Q92994 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms