Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NSUN4-201ENST00000307089 4344 ntTSL 1 (best)8.69□□□□□ -1.021e-8■■■□□ 16.2
UPF1Q92900 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.658e-7■■■□□ 16.2
UPF1Q92900 MARCH8-204ENST00000453424 5638 ntTSL 1 (best) BASIC12.03□□□□□ -0.488e-7■■■□□ 16.2
UPF1Q92900 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.44■■□□□ 1.182e-9■■■□□ 16.2
UPF1Q92900 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.34■□□□□ 0.692e-9■■■□□ 16.2
UPF1Q92900 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.27■□□□□ 0.512e-9■■■□□ 16.2
UPF1Q92900 QKI-210ENST00000537883 1106 ntTSL 313.08□□□□□ -0.322e-9■■■□□ 16.2
UPF1Q92900 QKI-212ENST00000541696 1097 ntTSL 211.86□□□□□ -0.512e-9■■■□□ 16.2
UPF1Q92900 QKI-213ENST00000544361 613 ntTSL 510.97□□□□□ -0.652e-9■■■□□ 16.2
UPF1Q92900 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC8.47□□□□□ -1.052e-9■■■□□ 16.2
UPF1Q92900 QKI-217ENST00000545607 846 ntTSL 58.35□□□□□ -1.072e-9■■■□□ 16.2
UPF1Q92900 KPNA4-201ENST00000334256 8981 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.351e-7■■■□□ 16.2
UPF1Q92900 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.93■■□□□ 1.14e-22■■■□□ 16.2
UPF1Q92900 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.53■□□□□ 0.564e-6■■■□□ 16.2
UPF1Q92900 PRKAG1-216ENST00000551770 1015 ntTSL 313□□□□□ -0.334e-6■■■□□ 16.2
UPF1Q92900 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.461e-6■■■□□ 16.2
UPF1Q92900 RNF144A-203ENST00000432850 805 ntTSL 316.3■□□□□ 0.21e-6■■■□□ 16.2
UPF1Q92900 VMA21-201ENST00000330374 4717 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.981e-7■■■□□ 16.2
UPF1Q92900 AKT1-204ENST00000544168 1564 ntTSL 223.23■■□□□ 1.314e-6■■■□□ 16.2
UPF1Q92900 SPTBN1-202ENST00000356805 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.611e-7■■■□□ 16.2
UPF1Q92900 SPTBN1-207ENST00000615901 10226 ntTSL 5 BASIC9.12□□□□□ -0.951e-7■■■□□ 16.2
UPF1Q92900 SPTBN1-204ENST00000467371 3332 ntTSL 28.57□□□□□ -1.041e-7■■■□□ 16.2
UPF1Q92900 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.215e-7■■■□□ 16.2
UPF1Q92900 GID4-205ENST00000579871 470 ntTSL 513.47□□□□□ -0.255e-7■■■□□ 16.2
UPF1Q92900 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.764e-6■■■□□ 16.2
UPF1Q92900 TMEM268-204ENST00000482552 771 ntTSL 310.91□□□□□ -0.662e-6■■■□□ 16.2
UPF1Q92900 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.39■■□□□ 1.021e-7■■■□□ 16.2
UPF1Q92900 TOX4-203ENST00000448790 4534 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.829e-7■■■□□ 16.2
UPF1Q92900 TOX4-212ENST00000613569 4711 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.889e-7■■■□□ 16.2
UPF1Q92900 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.68■□□□□ 0.14e-11■■■□□ 16.2
UPF1Q92900 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.352e-8■■■□□ 16.2
UPF1Q92900 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC28.59■■■□□ 2.172e-8■■■□□ 16.2
UPF1Q92900 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.32■■□□□ 12e-8■■■□□ 16.2
UPF1Q92900 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC9.61□□□□□ -0.872e-8■■■□□ 16.2
UPF1Q92900 TNKS-201ENST00000310430 9620 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.834e-7■■■□□ 16.2
UPF1Q92900 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.844e-16■■■□□ 16.1
UPF1Q92900 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC28.23■■■□□ 2.111e-10■■■□□ 16.1
UPF1Q92900 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.111e-10■■■□□ 16.1
UPF1Q92900 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11e-10■■■□□ 16.1
UPF1Q92900 LZIC-202ENST00000377223 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.11e-7■■■□□ 16.1
UPF1Q92900 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.31■□□□□ 0.26e-8■■■□□ 16.1
UPF1Q92900 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.066e-8■■■□□ 16.1
UPF1Q92900 CCNC-203ENST00000369220 2118 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.216e-8■■■□□ 16.1
UPF1Q92900 CCNC-201ENST00000326298 2212 ntTSL 1 (best)11.98□□□□□ -0.496e-8■■■□□ 16.1
UPF1Q92900 CALCOCO2-201ENST00000258947 3682 ntAPPRIS P3 TSL 1 (best) BASIC9.75□□□□□ -0.852e-7■■■□□ 16.1
UPF1Q92900 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC9.04□□□□□ -0.961e-7■■■□□ 16.1
UPF1Q92900 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.326e-14■■■□□ 16.1
UPF1Q92900 NDFIP1-202ENST00000503388 4164 ntTSL 24.71□□□□□ -1.666e-14■■■□□ 16.1
UPF1Q92900 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.079e-7■■■□□ 16.1
UPF1Q92900 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.071e-6■■■□□ 16.1
UPF1Q92900 NUDT16L1-205ENST00000590460 709 ntTSL 325.54■■□□□ 1.684e-9■■■□□ 16.1
UPF1Q92900 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.257e-7■■■□□ 16.1
UPF1Q92900 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.651e-6■■■□□ 16.1
UPF1Q92900 BCAM-209ENST00000590624 991 ntTSL 1 (best)28.63■■■□□ 2.175e-7■■■□□ 16.1
UPF1Q92900 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.725e-7■■■□□ 16.1
UPF1Q92900 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC14.43□□□□□ -0.15e-7■■■□□ 16.1
UPF1Q92900 THBS1-201ENST00000260356 7775 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.611e-8■■■□□ 16.1
UPF1Q92900 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC27.8■■■□□ 2.044e-7■■■□□ 16
UPF1Q92900 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.424e-7■■■□□ 16
UPF1Q92900 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.71e-18■■■□□ 16
UPF1Q92900 NCR3LG1-202ENST00000530403 2429 ntTSL 513.19□□□□□ -0.33e-6■■■□□ 16
UPF1Q92900 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.132e-6■■■□□ 16
UPF1Q92900 QPRT-201ENST00000219771 913 ntTSL 226.49■■□□□ 1.833e-6■■■□□ 16
UPF1Q92900 FAM78A-202ENST00000372269 3659 ntTSL 1 (best) BASIC12.36□□□□□ -0.439e-10■■■□□ 16
UPF1Q92900 FAM78A-201ENST00000247295 4560 ntTSL 211.29□□□□□ -0.69e-10■■■□□ 16
UPF1Q92900 MYO18A-218ENST00000546105 1442 ntTSL 226.71■■□□□ 1.875e-7■■■□□ 16
UPF1Q92900 DHDDS-208ENST00000431933 2673 ntTSL 510.74□□□□□ -0.692e-6■■■□□ 16
UPF1Q92900 DHDDS-209ENST00000434391 3338 ntTSL 1 (best)9.78□□□□□ -0.842e-6■■■□□ 16
UPF1Q92900 DHDDS-202ENST00000360009 3245 ntAPPRIS P4 TSL 2 BASIC9.72□□□□□ -0.852e-6■■■□□ 16
UPF1Q92900 KCTD20-206ENST00000474988 1618 ntTSL 224.24■■□□□ 1.472e-9■■■□□ 16
UPF1Q92900 ARRDC3-206ENST00000511391 821 ntTSL 212.89□□□□□ -0.351e-31■■■□□ 16
UPF1Q92900 PYCR1-214ENST00000585215 767 ntTSL 424.89■■□□□ 1.584e-10■■■□□ 16
UPF1Q92900 PYCR1-206ENST00000577624 510 ntTSL 324.5■■□□□ 1.514e-10■■■□□ 16
UPF1Q92900 PYCR1-205ENST00000405481 841 ntTSL 221.61■■□□□ 1.054e-10■■■□□ 16
UPF1Q92900 PYCR1-211ENST00000582198 868 ntTSL 520.16■□□□□ 0.824e-10■■■□□ 16
UPF1Q92900 GPX1-201ENST00000419349 1106 ntBASIC36.19■■■■□ 3.381e-7■■■□□ 16
UPF1Q92900 GPX1-203ENST00000496791 580 ntTSL 331.14■■■□□ 2.581e-7■■■□□ 16
UPF1Q92900 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC29.78■■■□□ 2.361e-7■■■□□ 16
UPF1Q92900 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC28.84■■■□□ 2.211e-7■■■□□ 16
UPF1Q92900 C8orf82-203ENST00000527462 401 ntAPPRIS ALT2 TSL 321.9■■□□□ 1.13e-8■■■□□ 16
UPF1Q92900 ULK1-203ENST00000540568 2145 ntTSL 218.24■□□□□ 0.517e-8■■■□□ 16
UPF1Q92900 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.382e-7■■■□□ 16
UPF1Q92900 ALKBH5-202ENST00000490106 2146 ntTSL 1 (best)11.5□□□□□ -0.572e-7■■■□□ 16
UPF1Q92900 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC18.38■□□□□ 0.531e-15■■■□□ 16
UPF1Q92900 DCTN2-215ENST00000550201 1527 ntTSL 516.75■□□□□ 0.278e-7■■■□□ 16
UPF1Q92900 DCTN2-201ENST00000434715 1677 ntTSL 5 BASIC13.31□□□□□ -0.288e-7■■■□□ 16
UPF1Q92900 DCTN2-209ENST00000548249 2061 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.468e-7■■■□□ 16
UPF1Q92900 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC24.24■■□□□ 1.472e-7■■■□□ 16
UPF1Q92900 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.42e-8■■■□□ 16
UPF1Q92900 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.39□□□□□ -0.112e-8■■■□□ 16
UPF1Q92900 AMPD2-220ENST00000528958 714 ntTSL 222.03■■□□□ 1.122e-6■■■□□ 16
UPF1Q92900 BTBD2-208ENST00000590646 572 ntTSL 420.7■□□□□ 0.94e-11■■■□□ 16
UPF1Q92900 BTBD2-205ENST00000588395 352 ntTSL 519.39■□□□□ 0.694e-11■■■□□ 16
UPF1Q92900 BTBD2-203ENST00000587742 559 ntTSL 518.26■□□□□ 0.514e-11■■■□□ 16
UPF1Q92900 EGFL7-206ENST00000492002 654 ntTSL 534.73■■■■□ 3.157e-10■■■□□ 16
UPF1Q92900 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC26.01■■□□□ 1.752e-6■■■□□ 16
UPF1Q92900 PCYT1A-209ENST00000441879 724 ntTSL 321.87■■□□□ 1.091e-6■■■□□ 16
UPF1Q92900 PCYT1A-201ENST00000292823 5597 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.791e-6■■■□□ 16
UPF1Q92900 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC8.74□□□□□ -1.011e-6■■■□□ 16
UPF1Q92900 SFXN5-207ENST00000461352 3578 ntTSL 1 (best)13.03□□□□□ -0.325e-7■■■□□ 15.9
Retrieved 100 of 15,879 protein–RNA pairs in 183.6 ms