Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
RTF1Q92541 TEN1-204ENST00000588202 862 ntTSL 3 BASIC24.08■■□□□ 1.45
RTF1Q92541 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
RTF1Q92541 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
RTF1Q92541 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
RTF1Q92541 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.44
RTF1Q92541 UBC-206ENST00000538617 1303 ntTSL 5 BASIC24.08■■□□□ 1.44
RTF1Q92541 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC24.08■■□□□ 1.44
RTF1Q92541 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC24.07■■□□□ 1.44
RTF1Q92541 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
RTF1Q92541 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
RTF1Q92541 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC24.07■■□□□ 1.44
RTF1Q92541 AP002414.4-201ENST00000589764 1148 ntBASIC24.07■■□□□ 1.44
RTF1Q92541 CLEC4GP1-201ENST00000596555 870 ntBASIC24.07■■□□□ 1.44
RTF1Q92541 AL390719.2-201ENST00000606993 987 ntBASIC24.07■■□□□ 1.44
RTF1Q92541 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC24.07■■□□□ 1.44
RTF1Q92541 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
RTF1Q92541 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC24.06■■□□□ 1.44
RTF1Q92541 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC24.06■■□□□ 1.44
RTF1Q92541 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC24.06■■□□□ 1.44
RTF1Q92541 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
RTF1Q92541 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC24.06■■□□□ 1.44
RTF1Q92541 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC24.06■■□□□ 1.44
RTF1Q92541 TK1-205ENST00000590862 642 ntTSL 3 BASIC24.06■■□□□ 1.44
RTF1Q92541 GPR32P1-201ENST00000601788 811 ntBASIC24.06■■□□□ 1.44
RTF1Q92541 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.06■■□□□ 1.44
RTF1Q92541 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC24.06■■□□□ 1.44
RTF1Q92541 KRT18P1-202ENST00000452408 1331 ntBASIC24.06■■□□□ 1.44
RTF1Q92541 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 AC009102.3-201ENST00000623118 1491 ntBASIC24.06■■□□□ 1.44
RTF1Q92541 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
RTF1Q92541 AL499627.1-201ENST00000569373 2188 ntBASIC24.05■■□□□ 1.44
RTF1Q92541 AC099343.3-201ENST00000605834 2503 ntBASIC24.05■■□□□ 1.44
RTF1Q92541 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 IGHGP-201ENST00000390555 1178 ntBASIC24.05■■□□□ 1.44
RTF1Q92541 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC24.05■■□□□ 1.44
RTF1Q92541 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC24.05■■□□□ 1.44
RTF1Q92541 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC24.05■■□□□ 1.44
RTF1Q92541 MIR3180-1-201ENST00000580374 94 ntBASIC24.05■■□□□ 1.44
RTF1Q92541 MIR3180-3-201ENST00000584616 94 ntBASIC24.05■■□□□ 1.44
RTF1Q92541 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.05■■□□□ 1.44
RTF1Q92541 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC24.05■■□□□ 1.44
RTF1Q92541 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
RTF1Q92541 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC24.04■■□□□ 1.44
RTF1Q92541 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.04■■□□□ 1.44
RTF1Q92541 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC24.04■■□□□ 1.44
RTF1Q92541 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC24.04■■□□□ 1.44
RTF1Q92541 PPOX-214ENST00000535223 664 ntTSL 3 BASIC24.04■■□□□ 1.44
RTF1Q92541 KRT126P-201ENST00000549467 1181 ntBASIC24.04■■□□□ 1.44
RTF1Q92541 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC24.04■■□□□ 1.44
RTF1Q92541 IL11-204ENST00000590625 1028 ntTSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC24.04■■□□□ 1.44
RTF1Q92541 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC24.04■■□□□ 1.44
RTF1Q92541 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC24.04■■□□□ 1.44
RTF1Q92541 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
RTF1Q92541 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC24.04■■□□□ 1.44
RTF1Q92541 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC24.03■■□□□ 1.44
RTF1Q92541 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
RTF1Q92541 KRT89P-201ENST00000620027 1478 ntBASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms