Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 AC083906.6-201ENST00000641366 219 ntBASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
HDDC3Q8N4P3 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.52■□□□□ 0.55
HDDC3Q8N4P3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AC116562.4-201ENST00000641316 2276 ntBASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AC009078.2-202ENST00000463353 338 ntBASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AP000867.3-201ENST00000524675 377 ntBASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AC024563.2-201ENST00000603282 481 ntBASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 AL031008.1-201ENST00000619963 541 ntBASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HDDC3Q8N4P3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 AP000593.1-201ENST00000393668 712 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 TSPY19P-201ENST00000418461 509 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 TSPY18P-201ENST00000441642 509 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 AL160237.2-201ENST00000556165 472 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 AL390719.2-201ENST00000606993 987 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 AL732292.2-201ENST00000609649 430 ntBASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HDDC3Q8N4P3 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms