Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 AC098934.4-201ENST00000564127 592 ntBASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NUDCD3Q8IVD9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 AC012313.1-201ENST00000593393 3059 ntBASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
NUDCD3Q8IVD9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 MYLKP1-201ENST00000509077 1580 ntBASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 AL138781.1-201ENST00000566567 1274 ntBASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.36■□□□□ 0.53
NUDCD3Q8IVD9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
NUDCD3Q8IVD9 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms