Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCNA1P78396 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.98■□□□□ 0.95
CCNA1P78396 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CCNA1P78396 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.98■□□□□ 0.95
CCNA1P78396 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
CCNA1P78396 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 AL031284.1-201ENST00000419297 478 ntBASIC20.98■□□□□ 0.95
CCNA1P78396 RNA5SP419-201ENST00000515908 135 ntBASIC20.98■□□□□ 0.95
CCNA1P78396 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.98■□□□□ 0.95
CCNA1P78396 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 ASL-204ENST00000395331 1538 ntTSL 5 BASIC20.98■□□□□ 0.95
CCNA1P78396 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCNA1P78396 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.97■□□□□ 0.95
CCNA1P78396 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.97■□□□□ 0.95
CCNA1P78396 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCNA1P78396 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCNA1P78396 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.97■□□□□ 0.95
CCNA1P78396 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 AL671883.3-201ENST00000603274 991 ntBASIC20.97■□□□□ 0.95
CCNA1P78396 AC008608.2-201ENST00000606089 416 ntBASIC20.97■□□□□ 0.95
CCNA1P78396 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.97■□□□□ 0.95
CCNA1P78396 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.97■□□□□ 0.95
CCNA1P78396 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
CCNA1P78396 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCNA1P78396 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.96■□□□□ 0.95
CCNA1P78396 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.96■□□□□ 0.95
CCNA1P78396 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCNA1P78396 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
CCNA1P78396 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.96■□□□□ 0.95
CCNA1P78396 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCNA1P78396 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.96■□□□□ 0.95
CCNA1P78396 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.96■□□□□ 0.95
CCNA1P78396 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.95
CCNA1P78396 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 AC009102.3-201ENST00000623118 1491 ntBASIC20.95■□□□□ 0.94
CCNA1P78396 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.95■□□□□ 0.94
CCNA1P78396 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 MIR574-201ENST00000385209 96 ntBASIC20.95■□□□□ 0.94
CCNA1P78396 AC132008.2-207ENST00000454517 770 ntBASIC20.95■□□□□ 0.94
CCNA1P78396 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.95■□□□□ 0.94
CCNA1P78396 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.95■□□□□ 0.94
CCNA1P78396 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.95■□□□□ 0.94
CCNA1P78396 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCNA1P78396 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
CCNA1P78396 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCNA1P78396 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms