Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
ABCA4P78363 VENTXP7-201ENST00000475503 772 ntBASIC15.89■□□□□ 0.13
ABCA4P78363 SLC25A1P1-201ENST00000528351 927 ntBASIC15.89■□□□□ 0.13
ABCA4P78363 PPOX-214ENST00000535223 664 ntTSL 3 BASIC15.89■□□□□ 0.13
ABCA4P78363 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.89■□□□□ 0.13
ABCA4P78363 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.89■□□□□ 0.13
ABCA4P78363 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
ABCA4P78363 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.89■□□□□ 0.13
ABCA4P78363 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
ABCA4P78363 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
ABCA4P78363 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA4P78363 AC092183.1-201ENST00000469884 875 ntBASIC15.88■□□□□ 0.13
ABCA4P78363 POLD2P1-201ENST00000511220 997 ntBASIC15.88■□□□□ 0.13
ABCA4P78363 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.88■□□□□ 0.13
ABCA4P78363 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
ABCA4P78363 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC15.88■□□□□ 0.13
ABCA4P78363 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
ABCA4P78363 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ABCA4P78363 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
ABCA4P78363 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
ABCA4P78363 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
ABCA4P78363 MIR3180-4-201ENST00000582223 153 ntBASIC15.88■□□□□ 0.13
ABCA4P78363 GPR32P1-201ENST00000601788 811 ntBASIC15.88■□□□□ 0.13
ABCA4P78363 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
ABCA4P78363 KRT8P32-201ENST00000512863 1461 ntBASIC15.88■□□□□ 0.13
ABCA4P78363 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.87■□□□□ 0.13
ABCA4P78363 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.87■□□□□ 0.13
ABCA4P78363 BNIP3P18-201ENST00000593976 575 ntBASIC15.87■□□□□ 0.13
ABCA4P78363 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 RCC2P3-201ENST00000418112 1537 ntBASIC15.87■□□□□ 0.13
ABCA4P78363 NSUN5P1-202ENST00000421140 1535 ntBASIC15.87■□□□□ 0.13
ABCA4P78363 NSUN5P2-203ENST00000457352 1529 ntBASIC15.87■□□□□ 0.13
ABCA4P78363 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA4P78363 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 FP475955.4-201ENST00000623131 1990 ntBASIC15.87■□□□□ 0.13
ABCA4P78363 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA4P78363 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.87■□□□□ 0.13
ABCA4P78363 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.87■□□□□ 0.13
ABCA4P78363 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
ABCA4P78363 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 AC093484.2-201ENST00000580996 2166 ntBASIC15.86■□□□□ 0.13
ABCA4P78363 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
ABCA4P78363 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
ABCA4P78363 POLI-202ENST00000406285 2030 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
ABCA4P78363 AL353692.3-201ENST00000407031 1396 ntBASIC15.86■□□□□ 0.13
ABCA4P78363 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.86■□□□□ 0.13
ABCA4P78363 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
ABCA4P78363 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.86■□□□□ 0.13
ABCA4P78363 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.86■□□□□ 0.13
ABCA4P78363 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.86■□□□□ 0.13
ABCA4P78363 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.86■□□□□ 0.13
ABCA4P78363 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms