Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.53■□□□□ 0.24
CLRN1P58418 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.53■□□□□ 0.24
CLRN1P58418 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
CLRN1P58418 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
CLRN1P58418 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 NEFHP1-201ENST00000412845 2629 ntBASIC16.52■□□□□ 0.24
CLRN1P58418 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 AC128688.1-201ENST00000487626 519 ntBASIC16.52■□□□□ 0.24
CLRN1P58418 NAPSB-206ENST00000562112 1266 ntBASIC16.52■□□□□ 0.24
CLRN1P58418 MIR4674-201ENST00000582457 87 ntBASIC16.52■□□□□ 0.24
CLRN1P58418 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLRN1P58418 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.52■□□□□ 0.24
CLRN1P58418 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.52■□□□□ 0.24
CLRN1P58418 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CLRN1P58418 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.52■□□□□ 0.24
CLRN1P58418 AC066615.1-201ENST00000640911 628 ntBASIC16.52■□□□□ 0.24
CLRN1P58418 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC16.52■□□□□ 0.24
CLRN1P58418 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CLRN1P58418 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CLRN1P58418 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLRN1P58418 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CLRN1P58418 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.52■□□□□ 0.23
CLRN1P58418 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLRN1P58418 MYLKP1-201ENST00000509077 1580 ntBASIC16.51■□□□□ 0.23
CLRN1P58418 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.51■□□□□ 0.23
CLRN1P58418 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.51■□□□□ 0.23
CLRN1P58418 MMP23A-201ENST00000234610 1017 ntBASIC16.51■□□□□ 0.23
CLRN1P58418 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 AP000593.1-201ENST00000393668 712 ntBASIC16.51■□□□□ 0.23
CLRN1P58418 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC16.51■□□□□ 0.23
CLRN1P58418 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 TSPY15P-201ENST00000457163 923 ntBASIC16.51■□□□□ 0.23
CLRN1P58418 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.51■□□□□ 0.23
CLRN1P58418 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CLRN1P58418 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC16.51■□□□□ 0.23
CLRN1P58418 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.51■□□□□ 0.23
CLRN1P58418 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.51■□□□□ 0.23
CLRN1P58418 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.51■□□□□ 0.23
CLRN1P58418 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC16.51■□□□□ 0.23
CLRN1P58418 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
CLRN1P58418 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLRN1P58418 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLRN1P58418 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC16.5■□□□□ 0.23
CLRN1P58418 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.5■□□□□ 0.23
CLRN1P58418 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CLRN1P58418 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms