Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 GPX1P1-201ENST00000388829 606 ntBASIC13.89□□□□□ -0.19
FOXA3P55318 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
FOXA3P55318 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 MAX-217ENST00000557277 728 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA3P55318 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 AC005837.3-201ENST00000612163 286 ntBASIC13.89□□□□□ -0.19
FOXA3P55318 BID-214ENST00000617586 542 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
FOXA3P55318 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.89□□□□□ -0.19
FOXA3P55318 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA3P55318 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA3P55318 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
FOXA3P55318 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA3P55318 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA3P55318 GOLGA6L5P-202ENST00000515341 1828 ntBASIC13.88□□□□□ -0.19
FOXA3P55318 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 BET1L-204ENST00000410108 637 ntTSL 3 BASIC13.88□□□□□ -0.19
FOXA3P55318 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC13.88□□□□□ -0.19
FOXA3P55318 CNN2P6-201ENST00000439038 900 ntBASIC13.88□□□□□ -0.19
FOXA3P55318 HES2-206ENST00000489730 730 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA3P55318 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
FOXA3P55318 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA3P55318 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA3P55318 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA3P55318 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 AC112777.1-201ENST00000540175 1423 ntBASIC13.88□□□□□ -0.19
FOXA3P55318 AC010980.2-201ENST00000587099 1412 ntBASIC13.88□□□□□ -0.19
FOXA3P55318 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 AD000864.1-201ENST00000624076 2295 ntBASIC13.88□□□□□ -0.19
FOXA3P55318 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA3P55318 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA3P55318 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA3P55318 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
FOXA3P55318 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 FLJ13224-201ENST00000313737 1514 ntBASIC13.87□□□□□ -0.19
FOXA3P55318 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA3P55318 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
FOXA3P55318 AL390719.1-204ENST00000412397 1219 ntBASIC13.87□□□□□ -0.19
FOXA3P55318 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 SPI1-203ENST00000533030 661 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC13.87□□□□□ -0.19
FOXA3P55318 AC008694.1-202ENST00000636953 945 ntBASIC13.87□□□□□ -0.19
FOXA3P55318 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.87□□□□□ -0.19
FOXA3P55318 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
FOXA3P55318 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.87□□□□□ -0.19
FOXA3P55318 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA3P55318 POR-209ENST00000439269 1858 ntTSL 2 BASIC13.87□□□□□ -0.19
FOXA3P55318 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.86□□□□□ -0.19
FOXA3P55318 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms