Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.36■■□□□ 1.01
CTCFP49711 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC21.36■■□□□ 1.01
CTCFP49711 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
CTCFP49711 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC21.36■■□□□ 1.01
CTCFP49711 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC21.36■■□□□ 1.01
CTCFP49711 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC21.36■■□□□ 1.01
CTCFP49711 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.36■■□□□ 1.01
CTCFP49711 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
CTCFP49711 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.36■■□□□ 1.01
CTCFP49711 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
CTCFP49711 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CTCFP49711 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
CTCFP49711 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC21.35■■□□□ 1.01
CTCFP49711 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.35■■□□□ 1.01
CTCFP49711 AC105339.3-201ENST00000560043 636 ntBASIC21.35■■□□□ 1.01
CTCFP49711 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.35■■□□□ 1.01
CTCFP49711 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC21.35■■□□□ 1.01
CTCFP49711 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.35■■□□□ 1.01
CTCFP49711 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.35■■□□□ 1.01
CTCFP49711 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC21.35■■□□□ 1.01
CTCFP49711 MIR4745-201ENST00000577608 62 ntBASIC21.35■■□□□ 1.01
CTCFP49711 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.35■■□□□ 1.01
CTCFP49711 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.35■■□□□ 1.01
CTCFP49711 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.35■■□□□ 1.01
CTCFP49711 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.35■■□□□ 1.01
CTCFP49711 AP001271.2-201ENST00000624018 1556 ntBASIC21.35■■□□□ 1.01
CTCFP49711 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
CTCFP49711 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
CTCFP49711 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CTCFP49711 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.34■■□□□ 1.01
CTCFP49711 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC21.34■■□□□ 1.01
CTCFP49711 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.34■■□□□ 1.01
CTCFP49711 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.34■■□□□ 1.01
CTCFP49711 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.34■■□□□ 1.01
CTCFP49711 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
CTCFP49711 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
CTCFP49711 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
CTCFP49711 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CTCFP49711 AP005212.1-201ENST00000581547 1997 ntBASIC21.34■■□□□ 1.01
CTCFP49711 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.34■■□□□ 1.01
CTCFP49711 AC073314.1-201ENST00000568729 2216 ntBASIC21.33■■□□□ 1.01
CTCFP49711 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
CTCFP49711 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.33■■□□□ 1.01
CTCFP49711 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.33■■□□□ 1.01
CTCFP49711 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.33■■□□□ 1.01
CTCFP49711 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.33■■□□□ 1.01
CTCFP49711 ALG1L5P-201ENST00000482043 771 ntBASIC21.33■■□□□ 1.01
CTCFP49711 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
CTCFP49711 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.33■■□□□ 1.01
CTCFP49711 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.33■■□□□ 1.01
CTCFP49711 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.33■■□□□ 1.01
CTCFP49711 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC21.33■■□□□ 1.01
CTCFP49711 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTCFP49711 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC21.33■■□□□ 1
CTCFP49711 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTCFP49711 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
CTCFP49711 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
CTCFP49711 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC21.33■■□□□ 1
CTCFP49711 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
CTCFP49711 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.32■■□□□ 1
CTCFP49711 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
CTCFP49711 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.32■■□□□ 1
CTCFP49711 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms