Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX2P48431 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SOX2P48431 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX2P48431 Z85996.1-201ENST00000494644 937 ntBASIC16.3■□□□□ 0.2
SOX2P48431 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.3■□□□□ 0.2
SOX2P48431 MYC-208ENST00000641036 567 ntBASIC16.3■□□□□ 0.2
SOX2P48431 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
SOX2P48431 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.3■□□□□ 0.2
SOX2P48431 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SOX2P48431 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.3■□□□□ 0.2
SOX2P48431 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SOX2P48431 AC012313.1-201ENST00000593393 3059 ntBASIC16.3■□□□□ 0.2
SOX2P48431 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SOX2P48431 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 KRT8P32-201ENST00000512863 1461 ntBASIC16.29■□□□□ 0.2
SOX2P48431 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX2P48431 AL357033.4-201ENST00000617703 1807 ntBASIC16.29■□□□□ 0.2
SOX2P48431 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC16.29■□□□□ 0.2
SOX2P48431 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 POU5F1P3-201ENST00000428824 1078 ntBASIC16.29■□□□□ 0.2
SOX2P48431 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC16.29■□□□□ 0.2
SOX2P48431 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.29■□□□□ 0.2
SOX2P48431 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC16.29■□□□□ 0.2
SOX2P48431 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 AC134043.2-201ENST00000624206 2238 ntBASIC16.29■□□□□ 0.2
SOX2P48431 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.29■□□□□ 0.2
SOX2P48431 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SOX2P48431 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 AC112777.1-201ENST00000540175 1423 ntBASIC16.28■□□□□ 0.2
SOX2P48431 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC16.28■□□□□ 0.2
SOX2P48431 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
SOX2P48431 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SOX2P48431 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SOX2P48431 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.27■□□□□ 0.2
SOX2P48431 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
SOX2P48431 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.27■□□□□ 0.2
SOX2P48431 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SOX2P48431 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms