Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RCC2P3-201ENST00000418112 1537 ntBASIC14.11□□□□□ -0.15
HLA-DMBP28068 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 AC135776.1-201ENST00000319817 2481 ntBASIC14.11□□□□□ -0.15
HLA-DMBP28068 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 KRT16P1-201ENST00000399124 1418 ntBASIC14.11□□□□□ -0.15
HLA-DMBP28068 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 AC011506.1-201ENST00000474329 610 ntBASIC14.11□□□□□ -0.15
HLA-DMBP28068 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 ARL16-209ENST00000573715 763 ntTSL 3 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 ARL16-211ENST00000576135 694 ntTSL 3 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 AL049637.2-201ENST00000641778 930 ntBASIC14.11□□□□□ -0.15
HLA-DMBP28068 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HLA-DMBP28068 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
HLA-DMBP28068 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 AL353708.3-201ENST00000610272 989 ntBASIC14.1□□□□□ -0.15
HLA-DMBP28068 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HLA-DMBP28068 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HLA-DMBP28068 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 TSPY7P-201ENST00000431358 1114 ntBASIC14.09□□□□□ -0.15
HLA-DMBP28068 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 KRT17P2-201ENST00000300992 1314 ntBASIC14.09□□□□□ -0.15
HLA-DMBP28068 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DMBP28068 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DMBP28068 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DMBP28068 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.08□□□□□ -0.15
HLA-DMBP28068 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms