Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 FDX1P1-201ENST00000449115 551 ntBASIC18.94■□□□□ 0.62
TOP3BO95985 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC18.94■□□□□ 0.62
TOP3BO95985 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.94■□□□□ 0.62
TOP3BO95985 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.94■□□□□ 0.62
TOP3BO95985 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.94■□□□□ 0.62
TOP3BO95985 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.94■□□□□ 0.62
TOP3BO95985 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
TOP3BO95985 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
TOP3BO95985 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
TOP3BO95985 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.93■□□□□ 0.62
TOP3BO95985 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
TOP3BO95985 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 TUBB8P6-201ENST00000436895 1288 ntBASIC18.93■□□□□ 0.62
TOP3BO95985 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.93■□□□□ 0.62
TOP3BO95985 KRT18P38-201ENST00000449496 1282 ntBASIC18.93■□□□□ 0.62
TOP3BO95985 AC008040.2-201ENST00000461049 708 ntBASIC18.93■□□□□ 0.62
TOP3BO95985 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.93■□□□□ 0.62
TOP3BO95985 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TOP3BO95985 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.93■□□□□ 0.62
TOP3BO95985 CYGB-204ENST00000589342 815 ntTSL 3 BASIC18.93■□□□□ 0.62
TOP3BO95985 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 AC116562.4-202ENST00000641738 218 ntBASIC18.93■□□□□ 0.62
TOP3BO95985 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.93■□□□□ 0.62
TOP3BO95985 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TOP3BO95985 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.93■□□□□ 0.62
TOP3BO95985 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 AL354751.1-201ENST00000412768 1863 ntBASIC18.92■□□□□ 0.62
TOP3BO95985 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.92■□□□□ 0.62
TOP3BO95985 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.92■□□□□ 0.62
TOP3BO95985 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.92■□□□□ 0.62
TOP3BO95985 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.92■□□□□ 0.62
TOP3BO95985 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.92■□□□□ 0.62
TOP3BO95985 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 AC006538.3-201ENST00000612495 578 ntBASIC18.92■□□□□ 0.62
TOP3BO95985 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.92■□□□□ 0.62
TOP3BO95985 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.92■□□□□ 0.62
TOP3BO95985 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.92■□□□□ 0.62
TOP3BO95985 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.92■□□□□ 0.62
TOP3BO95985 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TOP3BO95985 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.91■□□□□ 0.62
TOP3BO95985 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
TOP3BO95985 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.91■□□□□ 0.62
TOP3BO95985 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.91■□□□□ 0.62
TOP3BO95985 AL441883.1-201ENST00000566170 1045 ntBASIC18.91■□□□□ 0.62
TOP3BO95985 AL023973.1-201ENST00000624619 620 ntBASIC18.91■□□□□ 0.62
TOP3BO95985 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TOP3BO95985 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TOP3BO95985 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TOP3BO95985 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms