Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.21■□□□□ 0.51
SNX3O60493 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 AC093787.1-201ENST00000450396 207 ntBASIC18.21■□□□□ 0.51
SNX3O60493 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.21■□□□□ 0.51
SNX3O60493 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.21■□□□□ 0.51
SNX3O60493 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.21■□□□□ 0.51
SNX3O60493 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.21■□□□□ 0.51
SNX3O60493 RAP2CP1-201ENST00000605103 478 ntBASIC18.21■□□□□ 0.51
SNX3O60493 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNX3O60493 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SNX3O60493 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SNX3O60493 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
SNX3O60493 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SNX3O60493 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC18.2■□□□□ 0.5
SNX3O60493 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.2■□□□□ 0.5
SNX3O60493 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 AL139246.5-201ENST00000606645 996 ntBASIC18.2■□□□□ 0.5
SNX3O60493 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 AC006557.6-201ENST00000623071 864 ntBASIC18.2■□□□□ 0.5
SNX3O60493 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.2■□□□□ 0.5
SNX3O60493 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.2■□□□□ 0.5
SNX3O60493 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SNX3O60493 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNX3O60493 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
SNX3O60493 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
SNX3O60493 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX3O60493 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
SNX3O60493 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 AL160286.2-201ENST00000567150 934 ntBASIC18.19■□□□□ 0.5
SNX3O60493 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC18.19■□□□□ 0.5
SNX3O60493 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.19■□□□□ 0.5
SNX3O60493 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.19■□□□□ 0.5
SNX3O60493 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC18.19■□□□□ 0.5
SNX3O60493 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNX3O60493 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.18■□□□□ 0.5
SNX3O60493 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.18■□□□□ 0.5
SNX3O60493 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNX3O60493 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SNX3O60493 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SNX3O60493 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms