Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC19.61■□□□□ 0.73
SOX1O00570 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.61■□□□□ 0.73
SOX1O00570 ZNF815P-204ENST00000434898 1737 ntBASIC19.61■□□□□ 0.73
SOX1O00570 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SOX1O00570 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
SOX1O00570 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
SOX1O00570 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX1O00570 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX1O00570 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.61■□□□□ 0.73
SOX1O00570 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SOX1O00570 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.6■□□□□ 0.73
SOX1O00570 AL390955.2-201ENST00000603032 514 ntBASIC19.6■□□□□ 0.73
SOX1O00570 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.6■□□□□ 0.73
SOX1O00570 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.6■□□□□ 0.73
SOX1O00570 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SOX1O00570 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SOX1O00570 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX1O00570 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX1O00570 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.59■□□□□ 0.73
SOX1O00570 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.59■□□□□ 0.73
SOX1O00570 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX1O00570 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.59■□□□□ 0.73
SOX1O00570 AL138831.2-201ENST00000606564 490 ntBASIC19.59■□□□□ 0.73
SOX1O00570 AJ011932.1-201ENST00000621707 465 ntBASIC19.59■□□□□ 0.73
SOX1O00570 AP000867.4-201ENST00000641616 219 ntBASIC19.59■□□□□ 0.73
SOX1O00570 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.59■□□□□ 0.73
SOX1O00570 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 GPR89P-201ENST00000407924 1495 ntBASIC19.59■□□□□ 0.73
SOX1O00570 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SOX1O00570 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.59■□□□□ 0.73
SOX1O00570 AL512353.2-201ENST00000448759 1962 ntBASIC19.59■□□□□ 0.73
SOX1O00570 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
SOX1O00570 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SOX1O00570 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.58■□□□□ 0.72
SOX1O00570 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SOX1O00570 KRT18P27-201ENST00000427733 1299 ntBASIC19.58■□□□□ 0.72
SOX1O00570 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX1O00570 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.58■□□□□ 0.72
SOX1O00570 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.58■□□□□ 0.72
SOX1O00570 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.58■□□□□ 0.72
SOX1O00570 AC005593.1-201ENST00000624894 515 ntBASIC19.58■□□□□ 0.72
SOX1O00570 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.58■□□□□ 0.72
SOX1O00570 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SOX1O00570 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX1O00570 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.57■□□□□ 0.72
SOX1O00570 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX1O00570 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SOX1O00570 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SOX1O00570 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC19.57■□□□□ 0.72
SOX1O00570 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.57■□□□□ 0.72
SOX1O00570 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.57■□□□□ 0.72
SOX1O00570 POLD4-211ENST00000539074 714 ntTSL 3 BASIC19.57■□□□□ 0.72
SOX1O00570 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SOX1O00570 AC087641.1-201ENST00000557561 1021 ntBASIC19.57■□□□□ 0.72
SOX1O00570 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.57■□□□□ 0.72
SOX1O00570 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.56■□□□□ 0.72
SOX1O00570 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX1O00570 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX1O00570 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.56■□□□□ 0.72
SOX1O00570 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SOX1O00570 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SOX1O00570 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms