Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 BX276092.5-203ENST00000456199 560 ntBASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 AL160237.2-201ENST00000556165 472 ntBASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.29□□□□□ -0.12
NOTCH3Q9UM47 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 AP000593.1-201ENST00000393668 712 ntBASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 DRAXINP1-201ENST00000437611 948 ntBASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 GOLGA6L5P-202ENST00000515341 1828 ntBASIC14.28□□□□□ -0.12
NOTCH3Q9UM47 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 WDR6-223ENST00000627177 207 ntTSL 2 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NOTCH3Q9UM47 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 AC004870.1-201ENST00000315132 882 ntBASIC14.27□□□□□ -0.13
NOTCH3Q9UM47 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms