Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 AC008556.1-201ENST00000610908 2040 ntBASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LIMD1Q9UGP4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 NSUN5P1-202ENST00000421140 1535 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 NSUN5P2-203ENST00000457352 1529 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 FAM197Y8-203ENST00000450145 560 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 RNA5SP419-201ENST00000515908 135 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 SLC25A1P1-201ENST00000528351 927 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 AL592071.1-201ENST00000611956 408 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 TP73-AS1-207ENST00000624167 988 ntBASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
LIMD1Q9UGP4 AC087289.5-201ENST00000586076 3175 ntBASIC19.27■□□□□ 0.67
LIMD1Q9UGP4 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
LIMD1Q9UGP4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMD1Q9UGP4 AL109659.2-201ENST00000606809 1674 ntBASIC19.27■□□□□ 0.67
LIMD1Q9UGP4 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LIMD1Q9UGP4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 AL773604.1-201ENST00000617417 272 ntBASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
LIMD1Q9UGP4 HOXB1-202ENST00000577092 1414 ntBASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 RCC2P3-201ENST00000418112 1537 ntBASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 RN7SL606P-201ENST00000472779 293 ntBASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 AC092865.5-201ENST00000545435 363 ntBASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.25■□□□□ 0.67
LIMD1Q9UGP4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 IGHGP-201ENST00000390555 1178 ntBASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.24■□□□□ 0.67
LIMD1Q9UGP4 VENTXP7-201ENST00000475503 772 ntBASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms