Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 AC024243.1-201ENST00000609234 778 ntBASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SMC4Q9NTJ3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 LIN28AP1-201ENST00000429574 405 ntBASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 ATP5G1P1-201ENST00000448724 379 ntBASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.73■■□□□ 1.39
SMC4Q9NTJ3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 AC005521.1-201ENST00000393351 872 ntBASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 AL137013.1-201ENST00000432946 1228 ntBASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 SEC1P-202ENST00000473944 940 ntBASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 P4HB-223ENST00000576390 439 ntTSL 4 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 NEK4P2-201ENST00000580004 1012 ntBASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
SMC4Q9NTJ3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AL163051.1-201ENST00000569214 1512 ntBASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 GRAMD4P1-201ENST00000435181 1110 ntBASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AC104390.1-201ENST00000555663 520 ntBASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.71■■□□□ 1.39
SMC4Q9NTJ3 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms