Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 KRT18P57-201ENST00000443599 1254 ntBASIC19.08■□□□□ 0.64
USP29Q9HBJ7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP29Q9HBJ7 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 CRYGFP-201ENST00000418459 633 ntBASIC19.07■□□□□ 0.64
USP29Q9HBJ7 LIN28AP1-201ENST00000429574 405 ntBASIC19.07■□□□□ 0.64
USP29Q9HBJ7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 AC135776.1-201ENST00000319817 2481 ntBASIC19.07■□□□□ 0.64
USP29Q9HBJ7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP29Q9HBJ7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 PRR31-201ENST00000371629 978 ntTSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP29Q9HBJ7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 MCCD1P1-208ENST00000445732 328 ntBASIC19.05■□□□□ 0.64
USP29Q9HBJ7 ATP5G1P1-201ENST00000448724 379 ntBASIC19.05■□□□□ 0.64
USP29Q9HBJ7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 MIR4674-201ENST00000582457 87 ntBASIC19.05■□□□□ 0.64
USP29Q9HBJ7 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 AC018470.1-201ENST00000624790 3129 ntBASIC19.05■□□□□ 0.64
USP29Q9HBJ7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.05■□□□□ 0.64
USP29Q9HBJ7 AC005332.8-201ENST00000622750 2735 ntBASIC19.04■□□□□ 0.64
USP29Q9HBJ7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP29Q9HBJ7 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms