Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.24■□□□□ 0.19
LIME1Q9H400 AC009113.1-201ENST00000570267 2443 ntBASIC16.24■□□□□ 0.19
LIME1Q9H400 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
LIME1Q9H400 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
LIME1Q9H400 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIME1Q9H400 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.23■□□□□ 0.19
LIME1Q9H400 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 FAAHP1-202ENST00000446499 1238 ntBASIC16.23■□□□□ 0.19
LIME1Q9H400 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIME1Q9H400 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC16.23■□□□□ 0.19
LIME1Q9H400 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.23■□□□□ 0.19
LIME1Q9H400 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 AC024243.1-201ENST00000609234 778 ntBASIC16.23■□□□□ 0.19
LIME1Q9H400 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.23■□□□□ 0.19
LIME1Q9H400 AL031008.1-201ENST00000619963 541 ntBASIC16.23■□□□□ 0.19
LIME1Q9H400 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIME1Q9H400 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
LIME1Q9H400 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC16.23■□□□□ 0.19
LIME1Q9H400 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
LIME1Q9H400 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
LIME1Q9H400 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 AC026471.1-201ENST00000564629 3026 ntBASIC16.22■□□□□ 0.19
LIME1Q9H400 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.22■□□□□ 0.19
LIME1Q9H400 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
LIME1Q9H400 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 AC023511.2-201ENST00000618803 211 ntBASIC16.22■□□□□ 0.19
LIME1Q9H400 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.22■□□□□ 0.19
LIME1Q9H400 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIME1Q9H400 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIME1Q9H400 AC141586.3-201ENST00000562166 1838 ntBASIC16.22■□□□□ 0.19
LIME1Q9H400 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.21■□□□□ 0.19
LIME1Q9H400 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIME1Q9H400 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.21■□□□□ 0.19
LIME1Q9H400 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms