Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 CKBP1-201ENST00000565489 1086 ntBASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 AL031985.4-201ENST00000642138 673 ntBASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TRIM56Q9BRZ2 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TRIM56Q9BRZ2 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 AC142381.4-202ENST00000563973 229 ntBASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 AC073195.1-201ENST00000607241 877 ntBASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 MIR6786-201ENST00000616843 113 ntBASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 RCC2P3-201ENST00000418112 1537 ntBASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TRIM56Q9BRZ2 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AL353807.1-201ENST00000427475 662 ntBASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 FAM207BP-201ENST00000447172 505 ntBASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AC026271.3-201ENST00000571884 352 ntBASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AC008622.2-201ENST00000617006 1229 ntBASIC18.88■□□□□ 0.61
TRIM56Q9BRZ2 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms