Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL12A1Q99715 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
COL12A1Q99715 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.13■□□□□ 0.17
COL12A1Q99715 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
COL12A1Q99715 MIR4745-201ENST00000577608 62 ntBASIC16.13■□□□□ 0.17
COL12A1Q99715 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.13■□□□□ 0.17
COL12A1Q99715 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 RCN1P2-201ENST00000398357 915 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 AC009947.1-201ENST00000444350 727 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.12■□□□□ 0.17
COL12A1Q99715 OR7E14P-202ENST00000530490 1290 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 AF228730.6-201ENST00000641497 218 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 AC084121.3-201ENST00000641716 218 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 AC105233.6-201ENST00000642093 218 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 LINC01521-201ENST00000504184 1943 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL12A1Q99715 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC16.12■□□□□ 0.17
COL12A1Q99715 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 KRT18P2-201ENST00000447938 1258 ntBASIC16.12■□□□□ 0.17
COL12A1Q99715 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.12■□□□□ 0.17
COL12A1Q99715 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC16.12■□□□□ 0.17
COL12A1Q99715 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
COL12A1Q99715 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL12A1Q99715 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL12A1Q99715 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC16.11■□□□□ 0.17
COL12A1Q99715 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 PRSS29P-201ENST00000440800 595 ntBASIC16.11■□□□□ 0.17
COL12A1Q99715 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC16.11■□□□□ 0.17
COL12A1Q99715 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL12A1Q99715 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC16.11■□□□□ 0.17
COL12A1Q99715 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC16.11■□□□□ 0.17
COL12A1Q99715 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL12A1Q99715 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL12A1Q99715 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC008735.5-201ENST00000623544 497 ntBASIC16.1■□□□□ 0.17
COL12A1Q99715 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
COL12A1Q99715 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.1■□□□□ 0.17
COL12A1Q99715 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.1■□□□□ 0.17
COL12A1Q99715 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.1■□□□□ 0.17
COL12A1Q99715 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC16.1■□□□□ 0.17
COL12A1Q99715 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.1■□□□□ 0.17
COL12A1Q99715 AL512353.2-201ENST00000448759 1962 ntBASIC16.1■□□□□ 0.17
COL12A1Q99715 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL12A1Q99715 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms