Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC30.58■■■□□ 2.49
IFT140Q96RY7 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC30.58■■■□□ 2.49
IFT140Q96RY7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC012676.1-201ENST00000574705 1949 ntBASIC30.57■■■□□ 2.48
IFT140Q96RY7 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC099778.1-201ENST00000568593 1911 ntBASIC30.57■■■□□ 2.48
IFT140Q96RY7 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 MIR770-201ENST00000390219 98 ntBASIC30.57■■■□□ 2.48
IFT140Q96RY7 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 FEM1AP3-201ENST00000403722 1741 ntBASIC30.57■■■□□ 2.48
IFT140Q96RY7 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC30.57■■■□□ 2.48
IFT140Q96RY7 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
IFT140Q96RY7 AC009154.2-201ENST00000621177 724 ntBASIC30.57■■■□□ 2.48
IFT140Q96RY7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 AL163051.1-201ENST00000569214 1512 ntBASIC30.56■■■□□ 2.48
IFT140Q96RY7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
IFT140Q96RY7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
IFT140Q96RY7 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 SOD2-201ENST00000337404 991 ntTSL 2 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 AC073621.1-201ENST00000392730 636 ntBASIC30.56■■■□□ 2.48
IFT140Q96RY7 CNN2P11-201ENST00000429351 262 ntBASIC30.56■■■□□ 2.48
IFT140Q96RY7 WBP2-203ENST00000433525 928 ntTSL 2 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
IFT140Q96RY7 AC108751.1-201ENST00000490852 363 ntBASIC30.56■■■□□ 2.48
IFT140Q96RY7 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 AC027612.4-201ENST00000605371 583 ntBASIC30.56■■■□□ 2.48
IFT140Q96RY7 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC30.56■■■□□ 2.48
IFT140Q96RY7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC30.55■■■□□ 2.48
IFT140Q96RY7 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
IFT140Q96RY7 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC30.55■■■□□ 2.48
IFT140Q96RY7 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
IFT140Q96RY7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
IFT140Q96RY7 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 AC244107.1-201ENST00000442033 332 ntBASIC30.55■■■□□ 2.48
IFT140Q96RY7 MTCL1P1-201ENST00000446207 792 ntBASIC30.55■■■□□ 2.48
IFT140Q96RY7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 COX20P2-201ENST00000452636 358 ntBASIC30.55■■■□□ 2.48
IFT140Q96RY7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 AP002472.1-201ENST00000577490 586 ntBASIC30.55■■■□□ 2.48
IFT140Q96RY7 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC30.55■■■□□ 2.48
IFT140Q96RY7 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 SYS1-203ENST00000414310 795 ntTSL 3 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 KRT18P2-201ENST00000447938 1258 ntBASIC30.54■■■□□ 2.48
IFT140Q96RY7 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
IFT140Q96RY7 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC30.54■■■□□ 2.48
IFT140Q96RY7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC30.54■■■□□ 2.48
IFT140Q96RY7 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 WDR53-203ENST00000429115 683 ntTSL 2 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC30.53■■■□□ 2.48
IFT140Q96RY7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
IFT140Q96RY7 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC30.52■■■□□ 2.48
IFT140Q96RY7 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
IFT140Q96RY7 UBQLN4P1-201ENST00000461599 1801 ntBASIC30.52■■■□□ 2.48
IFT140Q96RY7 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC30.52■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms