Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.18■□□□□ 0.98
USP28Q96RU2 AC026471.5-201ENST00000615068 467 ntBASIC21.18■□□□□ 0.98
USP28Q96RU2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC21.18■□□□□ 0.98
USP28Q96RU2 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC21.18■□□□□ 0.98
USP28Q96RU2 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
USP28Q96RU2 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 AC034236.2-201ENST00000606662 1610 ntBASIC21.18■□□□□ 0.98
USP28Q96RU2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
USP28Q96RU2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.18■□□□□ 0.98
USP28Q96RU2 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.18■□□□□ 0.98
USP28Q96RU2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP28Q96RU2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
USP28Q96RU2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
USP28Q96RU2 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
USP28Q96RU2 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC21.17■□□□□ 0.98
USP28Q96RU2 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
USP28Q96RU2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 AL355355.2-201ENST00000442321 338 ntBASIC21.16■□□□□ 0.98
USP28Q96RU2 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.16■□□□□ 0.98
USP28Q96RU2 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC21.16■□□□□ 0.98
USP28Q96RU2 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 AP001412.1-201ENST00000608405 714 ntBASIC21.16■□□□□ 0.98
USP28Q96RU2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.16■□□□□ 0.98
USP28Q96RU2 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.16■□□□□ 0.98
USP28Q96RU2 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
USP28Q96RU2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.15■□□□□ 0.98
USP28Q96RU2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
USP28Q96RU2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP28Q96RU2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP28Q96RU2 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.15■□□□□ 0.98
USP28Q96RU2 AP000593.1-201ENST00000393668 712 ntBASIC21.15■□□□□ 0.98
USP28Q96RU2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.15■□□□□ 0.98
USP28Q96RU2 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.15■□□□□ 0.98
USP28Q96RU2 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 MIR3180-5-201ENST00000583743 153 ntBASIC21.15■□□□□ 0.98
USP28Q96RU2 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.15■□□□□ 0.98
USP28Q96RU2 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
USP28Q96RU2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC21.15■□□□□ 0.98
USP28Q96RU2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
USP28Q96RU2 AC036111.1-201ENST00000533973 1582 ntBASIC21.14■□□□□ 0.98
USP28Q96RU2 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.14■□□□□ 0.98
USP28Q96RU2 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP28Q96RU2 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP28Q96RU2 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP28Q96RU2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
USP28Q96RU2 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
USP28Q96RU2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.14■□□□□ 0.98
USP28Q96RU2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
USP28Q96RU2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP28Q96RU2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
USP28Q96RU2 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
USP28Q96RU2 AC138028.4-201ENST00000564984 1845 ntBASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms