Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ABBA01031674.1-201ENST00000635145 728 ntBASIC13.9□□□□□ -0.18
LINC00477Q96M19 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LINC00477Q96M19 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LINC00477Q96M19 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LINC00477Q96M19 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC13.9□□□□□ -0.19
LINC00477Q96M19 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.19
LINC00477Q96M19 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LINC00477Q96M19 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 AL109659.2-201ENST00000606809 1674 ntBASIC13.89□□□□□ -0.19
LINC00477Q96M19 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 MYLKP1-201ENST00000509077 1580 ntBASIC13.89□□□□□ -0.19
LINC00477Q96M19 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 KRT18P41-201ENST00000518924 1277 ntBASIC13.89□□□□□ -0.19
LINC00477Q96M19 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 C1QBPP2-201ENST00000528754 825 ntBASIC13.89□□□□□ -0.19
LINC00477Q96M19 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
LINC00477Q96M19 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LINC00477Q96M19 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 FSCN1P1-201ENST00000568912 1481 ntBASIC13.88□□□□□ -0.19
LINC00477Q96M19 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AP000593.1-201ENST00000393668 712 ntBASIC13.88□□□□□ -0.19
LINC00477Q96M19 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AC128676.1-201ENST00000454392 318 ntBASIC13.88□□□□□ -0.19
LINC00477Q96M19 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AF186192.3-201ENST00000583427 947 ntBASIC13.88□□□□□ -0.19
LINC00477Q96M19 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC13.88□□□□□ -0.19
LINC00477Q96M19 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LINC00477Q96M19 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms