Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 SEC1P-202ENST00000473944 940 ntBASIC16.62■□□□□ 0.25
CPNE4Q96A23 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 AC104390.1-201ENST00000555663 520 ntBASIC16.62■□□□□ 0.25
CPNE4Q96A23 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 MIR3180-4-201ENST00000582223 153 ntBASIC16.62■□□□□ 0.25
CPNE4Q96A23 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CPNE4Q96A23 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.62■□□□□ 0.25
CPNE4Q96A23 AC112777.1-201ENST00000540175 1423 ntBASIC16.62■□□□□ 0.25
CPNE4Q96A23 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 CYP51A1P1-201ENST00000492267 1507 ntBASIC16.61■□□□□ 0.25
CPNE4Q96A23 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 FAM8A6P-201ENST00000407496 1135 ntBASIC16.61■□□□□ 0.25
CPNE4Q96A23 MIR1224-201ENST00000408193 85 ntBASIC16.61■□□□□ 0.25
CPNE4Q96A23 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.61■□□□□ 0.25
CPNE4Q96A23 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 CD81-212ENST00000526072 1172 ntTSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 AP000974.1-201ENST00000623909 2387 ntBASIC16.61■□□□□ 0.25
CPNE4Q96A23 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CPNE4Q96A23 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.61■□□□□ 0.25
CPNE4Q96A23 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 STARP1-201ENST00000397973 869 ntBASIC16.6■□□□□ 0.25
CPNE4Q96A23 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 AC010331.1-201ENST00000611423 582 ntBASIC16.6■□□□□ 0.25
CPNE4Q96A23 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
CPNE4Q96A23 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.6■□□□□ 0.25
CPNE4Q96A23 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPNE4Q96A23 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
CPNE4Q96A23 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPNE4Q96A23 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPNE4Q96A23 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.59■□□□□ 0.25
CPNE4Q96A23 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
CPNE4Q96A23 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.59■□□□□ 0.25
CPNE4Q96A23 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.59■□□□□ 0.25
CPNE4Q96A23 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms