Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 ALG1L5P-201ENST00000482043 771 ntBASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 AC138761.1-201ENST00000584393 385 ntBASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 AC009237.14-201ENST00000609975 1594 ntBASIC21.91■■□□□ 1.1
SMC1BQ8NDV3 AP005212.1-201ENST00000581547 1997 ntBASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 INTS4P1-201ENST00000438455 1935 ntBASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 AC107918.4-202ENST00000641623 219 ntBASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SMC1BQ8NDV3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.89■■□□□ 1.1
SMC1BQ8NDV3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.89■■□□□ 1.1
SMC1BQ8NDV3 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 ABCD1P5-201ENST00000445663 754 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AC190387.1-201ENST00000551683 408 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AL139288.1-201ENST00000623748 933 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AL035252.4-201ENST00000624174 288 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 ZNF815P-204ENST00000434898 1737 ntBASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
SMC1BQ8NDV3 FEM1AP4-201ENST00000443167 1987 ntBASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 AC005034.1-201ENST00000426657 489 ntBASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 AL162377.1-201ENST00000618844 1793 ntBASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC21.88■■□□□ 1.09
SMC1BQ8NDV3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SMC1BQ8NDV3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms