Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 PIN1-206ENST00000587625 878 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.92■□□□□ 0.62
SLC44A3Q8N4M1 IRX1P1-201ENST00000438849 1838 ntBASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 BX842568.4-201ENST00000421222 227 ntBASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 AC068587.9-201ENST00000641814 219 ntBASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 ZNF259P1-201ENST00000407656 1365 ntBASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SLC44A3Q8N4M1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 FAM220CP-201ENST00000395253 831 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 RCN1P2-201ENST00000398357 915 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AC073648.2-201ENST00000510116 352 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 MIR7706-201ENST00000613747 67 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AL355877.3-201ENST00000622820 899 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 FAM215A-202ENST00000632077 792 ntBASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.9■□□□□ 0.62
SLC44A3Q8N4M1 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SLC44A3Q8N4M1 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.89■□□□□ 0.62
SLC44A3Q8N4M1 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 HNRNPDP1-201ENST00000439535 754 ntBASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SLC44A3Q8N4M1 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 LINC01006-201ENST00000333319 2292 ntBASIC18.88■□□□□ 0.61
SLC44A3Q8N4M1 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms