Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL28A1Q2UY09 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL28A1Q2UY09 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL28A1Q2UY09 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
COL28A1Q2UY09 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
COL28A1Q2UY09 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
COL28A1Q2UY09 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.76■□□□□ 0.43
COL28A1Q2UY09 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 AKR1C7P-201ENST00000305623 895 ntBASIC17.75■□□□□ 0.43
COL28A1Q2UY09 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 RNA5SP419-201ENST00000515908 135 ntBASIC17.75■□□□□ 0.43
COL28A1Q2UY09 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
COL28A1Q2UY09 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL28A1Q2UY09 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms