Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC12.97□□□□□ -0.33
CKS1BP61024 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC12.97□□□□□ -0.33
CKS1BP61024 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
CKS1BP61024 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 AC068338.2-201ENST00000563278 1430 ntBASIC12.96□□□□□ -0.33
CKS1BP61024 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 NXN-202ENST00000537628 1340 ntTSL 3 BASIC12.96□□□□□ -0.33
CKS1BP61024 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC12.96□□□□□ -0.33
CKS1BP61024 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
CKS1BP61024 CALM3-202ENST00000391918 702 ntTSL 2 BASIC12.96□□□□□ -0.33
CKS1BP61024 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC12.96□□□□□ -0.33
CKS1BP61024 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 PLLP-204ENST00000569059 665 ntTSL 3 BASIC12.96□□□□□ -0.33
CKS1BP61024 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC12.96□□□□□ -0.33
CKS1BP61024 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
CKS1BP61024 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC12.96□□□□□ -0.33
CKS1BP61024 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC12.96□□□□□ -0.34
CKS1BP61024 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
CKS1BP61024 AC018553.1-201ENST00000616682 1458 ntBASIC12.96□□□□□ -0.34
CKS1BP61024 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC12.96□□□□□ -0.34
CKS1BP61024 AC009113.1-201ENST00000570267 2443 ntBASIC12.96□□□□□ -0.34
CKS1BP61024 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.96□□□□□ -0.34
CKS1BP61024 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
CKS1BP61024 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 GUK1-205ENST00000366722 850 ntTSL 3 BASIC12.95□□□□□ -0.34
CKS1BP61024 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC12.95□□□□□ -0.34
CKS1BP61024 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 ZNRF2P3-201ENST00000424200 374 ntBASIC12.95□□□□□ -0.34
CKS1BP61024 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC12.95□□□□□ -0.34
CKS1BP61024 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC12.95□□□□□ -0.34
CKS1BP61024 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
CKS1BP61024 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC12.95□□□□□ -0.34
CKS1BP61024 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
CKS1BP61024 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
CKS1BP61024 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms