Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
PEX3P56589 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.85
PEX3P56589 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.39■□□□□ 0.85
PEX3P56589 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.38■□□□□ 0.85
PEX3P56589 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 AC112907.2-201ENST00000448639 330 ntBASIC20.38■□□□□ 0.85
PEX3P56589 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC20.38■□□□□ 0.85
PEX3P56589 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 MIR3180-4-201ENST00000582223 153 ntBASIC20.38■□□□□ 0.85
PEX3P56589 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.38■□□□□ 0.85
PEX3P56589 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC20.38■□□□□ 0.85
PEX3P56589 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.38■□□□□ 0.85
PEX3P56589 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.38■□□□□ 0.85
PEX3P56589 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PEX3P56589 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
PEX3P56589 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
PEX3P56589 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.37■□□□□ 0.85
PEX3P56589 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.37■□□□□ 0.85
PEX3P56589 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.37■□□□□ 0.85
PEX3P56589 AC092597.1-201ENST00000487352 616 ntBASIC20.37■□□□□ 0.85
PEX3P56589 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.37■□□□□ 0.85
PEX3P56589 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.37■□□□□ 0.85
PEX3P56589 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.37■□□□□ 0.85
PEX3P56589 WIZP1-201ENST00000531444 2299 ntBASIC20.37■□□□□ 0.85
PEX3P56589 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
PEX3P56589 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
PEX3P56589 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.36■□□□□ 0.85
PEX3P56589 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
PEX3P56589 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
PEX3P56589 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.36■□□□□ 0.85
PEX3P56589 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.36■□□□□ 0.85
PEX3P56589 HYMAI.1-201ENST00000620949 238 ntBASIC20.36■□□□□ 0.85
PEX3P56589 AC079602.3-201ENST00000623931 403 ntBASIC20.36■□□□□ 0.85
PEX3P56589 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.36■□□□□ 0.85
PEX3P56589 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
PEX3P56589 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
PEX3P56589 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
PEX3P56589 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
PEX3P56589 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.35■□□□□ 0.85
PEX3P56589 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 AL671277.2-201ENST00000458060 996 ntBASIC20.35■□□□□ 0.85
PEX3P56589 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.35■□□□□ 0.85
PEX3P56589 AC087388.1-201ENST00000571370 1112 ntBASIC20.35■□□□□ 0.85
PEX3P56589 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.35■□□□□ 0.85
PEX3P56589 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC20.35■□□□□ 0.85
PEX3P56589 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
PEX3P56589 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PEX3P56589 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.34■□□□□ 0.85
PEX3P56589 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PEX3P56589 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
PEX3P56589 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.34■□□□□ 0.85
PEX3P56589 ARMC10P1-201ENST00000313754 855 ntBASIC20.34■□□□□ 0.85
PEX3P56589 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.34■□□□□ 0.85
PEX3P56589 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.34■□□□□ 0.85
PEX3P56589 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.34■□□□□ 0.85
PEX3P56589 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.34■□□□□ 0.85
PEX3P56589 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PEX3P56589 AL138781.2-201ENST00000617896 1843 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms